PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.342640.1
Common NameCsa_3G860270, LOC101205604
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 430aa    MW: 46736.9 Da    PI: 7.1766
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.342640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66e-053143521255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Cucsa.342640.1 314 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 352
                     7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.299302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.03E-5312356No hitNo description
SuperFamilySSF474591.01E-10312363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-9316359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MESTANLNHH QHQLQDHQLL LASSSSSSSS SSSLSIVPSY FGLGTAWSSN ISLNNNNTCN  60
VYDNPTIFNG EVTTTNSSHP IRSSDCSNNF FTQSLHHSQQ QISSTPPTTP PPPPPHHQSF  120
PKFTEILNNN NNITNLQDFI NINNNNDSDL NDLTHKLLIK TLISSGCQIN GTDHPIISRS  180
SNNNRPPHFP QIYPSINVSN WNLSSQPPPP PSFSNSLDLN LQTPADMLVG SFRQDNFGIF  240
KETVSDFHDQ IQESPPTGTL PCIIPSKMTT YSSAEECKPK RGCNSMESRL NQQSPPLKKS  300
RLDSRASCPP FKVRKEKLGD RIAALQQLVA PFGKTDTASV LMEAIGYIKF LQNQVETLSV  360
PYMKPAGGNK ATQPTHRSSV EDGNEGGQNR DLRSRGLCLV PLGCLSYVTG DSGGGVGIWP  420
PPGFNGGTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652433.10.0PREDICTED: transcription factor bHLH110 isoform X3
TrEMBLA0A0A0LJ180.0A0A0A0LJ18_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-49bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]